# command:    cmsearch --toponly --tabfile chlorophyta.tab srp_rfam_bact.cm regexp_search.out
# date:       Fri Nov 19 13:50:51 2010
# num seqs:   97
# dbsize(Mb): 0.009700
#
# Pre-search info for CM 1: SRP_bact
#
#                                  cutoffs            predictions     
#                            -------------------  --------------------
# rnd  mod  alg  cfg   beta     E value   bit sc     surv     run time
# ---  ---  ---  ---  -----  ----------  -------  -------  -----------
#   1   cm  ins  loc  1e-15       1.000     6.79   0.0099  00:00:10.60
#
# CM: SRP_bact
#                                                                                             target coord   query coord                         
#                                                                                   ----------------------  ------------                         
# model name  target name                                                                start        stop  start   stop    bit sc   E-value  GC%
# ----------  --------------------------------------------------------------------  ----------  ----------  -----  -----  --------  --------  ---
  SRP_bact    9_7524759_Chlorella_vulgaris_+                                                 4         100      1    101     33.81  5.07e-09   35
  SRP_bact    23_134270089_Leptosira_terrestris_UTEX_333_+                                   6          99      1    101     32.82  1.02e-08   32
  SRP_bact    24_226348838_Micromonas_pusilla_CCMP1545_-                                     5          98      1    101     39.99  6.42e-11   40
  SRP_bact    26_226431119_Micromonas_sp._RCC299_-                                           4          98      1    101     44.46  2.73e-12   38
  SRP_bact    32_217314511_Monomastix_sp._OKE-1_-                                            6          96      1    101     28.04  2.98e-07   43
  SRP_bact    33_11467755_Nephroselmis_olivacea_+                                            4         100      1    101     27.71  3.77e-07   51
  SRP_bact    43_108773302_Oltmannsiellopsis_viridis_+                                       7          97      1    101     25.28  2.11e-06   31
  SRP_bact    49_113170411_Ostreococcus_tauri_+                                              4          96      1    101     36.20  9.35e-10   39
  SRP_bact    57_229915563_Parachlorella_kessleri_culture-collection_SAG:211-11g_-           6         100      1    101     30.58  4.96e-08   37
  SRP_bact    60_229915480_Pedinomonas_minor_culture-collection_UTEX:LB_1350_-               4          99      1    101     33.16  8.02e-09   32
  SRP_bact    78_217314442_Pycnococcus_provasolii_+                                          6          95      1    101     40.20  5.54e-11   53
  SRP_bact    83_215882693_Pyramimonas_parkeae_-                                             5         100      1    101     36.18  9.46e-10   38
  SRP_bact    85_108773031_Scenedesmus_obliquus_-                                            5          98      1    101     33.75  5.29e-09   33
  SRP_bact    87_115349964_Stigeoclonium_helveticum_+                                       38          84      1    101     12.12  2.31e-02   57
  SRP_bact    90_115349964_Stigeoclonium_helveticum_+                                       38          84      1    101     11.73  3.05e-02   51
  SRP_bact    94_115349964_Stigeoclonium_helveticum_-                                       38          85      1    101      7.06  8.22e-01   27
  SRP_bact    95_115349964_Stigeoclonium_helveticum_-                                       38          84      1    101     12.04  2.45e-02   55
#
# Post-search info for CM 1: SRP_bact
#
#                              number of hits       surv fraction  
#                            -------------------  -----------------
# rnd  mod  alg  cfg   beta    expected   actual  expected   actual
# ---  ---  ---  ---  -----  ----------  -------  --------  -------
#   1   cm  ins  loc  1e-15       1.000       17    0.0099   0.1456
#
# expected time    actual time
# -------------  -------------
#   00:00:10.60    00:00:08.00