# command: cmsearch --toponly --tabfile chlorophyta.tab srp_rfam_bact.cm regexp_search.out # date: Fri Nov 19 13:50:51 2010 # num seqs: 97 # dbsize(Mb): 0.009700 # # Pre-search info for CM 1: SRP_bact # # cutoffs predictions # ------------------- -------------------- # rnd mod alg cfg beta E value bit sc surv run time # --- --- --- --- ----- ---------- ------- ------- ----------- # 1 cm ins loc 1e-15 1.000 6.79 0.0099 00:00:10.60 # # CM: SRP_bact # target coord query coord # ---------------------- ------------ # model name target name start stop start stop bit sc E-value GC% # ---------- -------------------------------------------------------------------- ---------- ---------- ----- ----- -------- -------- --- SRP_bact 9_7524759_Chlorella_vulgaris_+ 4 100 1 101 33.81 5.07e-09 35 SRP_bact 23_134270089_Leptosira_terrestris_UTEX_333_+ 6 99 1 101 32.82 1.02e-08 32 SRP_bact 24_226348838_Micromonas_pusilla_CCMP1545_- 5 98 1 101 39.99 6.42e-11 40 SRP_bact 26_226431119_Micromonas_sp._RCC299_- 4 98 1 101 44.46 2.73e-12 38 SRP_bact 32_217314511_Monomastix_sp._OKE-1_- 6 96 1 101 28.04 2.98e-07 43 SRP_bact 33_11467755_Nephroselmis_olivacea_+ 4 100 1 101 27.71 3.77e-07 51 SRP_bact 43_108773302_Oltmannsiellopsis_viridis_+ 7 97 1 101 25.28 2.11e-06 31 SRP_bact 49_113170411_Ostreococcus_tauri_+ 4 96 1 101 36.20 9.35e-10 39 SRP_bact 57_229915563_Parachlorella_kessleri_culture-collection_SAG:211-11g_- 6 100 1 101 30.58 4.96e-08 37 SRP_bact 60_229915480_Pedinomonas_minor_culture-collection_UTEX:LB_1350_- 4 99 1 101 33.16 8.02e-09 32 SRP_bact 78_217314442_Pycnococcus_provasolii_+ 6 95 1 101 40.20 5.54e-11 53 SRP_bact 83_215882693_Pyramimonas_parkeae_- 5 100 1 101 36.18 9.46e-10 38 SRP_bact 85_108773031_Scenedesmus_obliquus_- 5 98 1 101 33.75 5.29e-09 33 SRP_bact 87_115349964_Stigeoclonium_helveticum_+ 38 84 1 101 12.12 2.31e-02 57 SRP_bact 90_115349964_Stigeoclonium_helveticum_+ 38 84 1 101 11.73 3.05e-02 51 SRP_bact 94_115349964_Stigeoclonium_helveticum_- 38 85 1 101 7.06 8.22e-01 27 SRP_bact 95_115349964_Stigeoclonium_helveticum_- 38 84 1 101 12.04 2.45e-02 55 # # Post-search info for CM 1: SRP_bact # # number of hits surv fraction # ------------------- ----------------- # rnd mod alg cfg beta expected actual expected actual # --- --- --- --- ----- ---------- ------- -------- ------- # 1 cm ins loc 1e-15 1.000 17 0.0099 0.1456 # # expected time actual time # ------------- ------------- # 00:00:10.60 00:00:08.00